Package: kma (1.4.15-1 and others)

[ Source: kma  ]

mapping genomic sequences to raw reads directly against redundant databases

KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particularly good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non- unique matches are resolved using the "ConClave" sorting scheme, and a consensus sequence are outputtet in addition to other common attributes.

Other Packages Related to kma

• dep: libc6 (>= 2.29) [hppa]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.31) [m68k, sh4]

  dep: libc6 (>= 2.34) [not alpha, hppa, ia64, m68k, sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download kma

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.4.15-1	212.8 kB	799.0 kB	[list of files]
amd64	1.4.15-1	214.6 kB	592.0 kB	[list of files]
arm64	1.4.15-1	202.4 kB	732.0 kB	[list of files]
hppa (unofficial port)	1.3.23-1	136.9 kB	355.0 kB	[list of files]
ia64 (unofficial port)	1.4.14-2	258.7 kB	1,177.0 kB	[list of files]
m68k (unofficial port)	1.3.23-1	121.6 kB	328.0 kB	[list of files]
mips64el	1.4.15-1	211.9 kB	824.0 kB	[list of files]
ppc64 (unofficial port)	1.4.15-1	224.5 kB	860.0 kB	[list of files]
ppc64el	1.4.15-1	228.4 kB	796.0 kB	[list of files]
riscv64	1.4.15-1	231.2 kB	504.0 kB	[list of files]
s390x	1.4.15-1	236.3 kB	684.0 kB	[list of files]
sh4 (unofficial port)	1.3.23-1	166.7 kB	321.0 kB	[list of files]
sparc64 (unofficial port)	1.4.15-1	189.3 kB	3,106.0 kB	[list of files]
x32 (unofficial port)	1.4.15-1	170.9 kB	433.0 kB	[list of files]