Pakket: busco (5.5.0-3 en anderen)

[ Bron: busco  ]

benchmarking sets of universal single-copy orthologs

Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO).

 * Automated selection of lineages issued from https://www.orthodb.org/
 * Automated download of all necessary files and datasets to conduct a run
 * Use prodigal for non-eukaryotic genomes

Andere aan busco gerelateerde pakketten

• dep: bbmap

  BBTools genomic aligner and other tools for short sequences

• dep: hmmer

  profile hidden Markov models for protein sequence analysis

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-pandas

  data structures for "relational" or "labeled" data

busco downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	5.5.0-2	286,0 kB	1.236,0 kB	[overzicht]
amd64	5.5.0-3	286,0 kB	1.236,0 kB	[overzicht]
arm64	5.5.0-3	286,0 kB	1.236,0 kB	[overzicht]
i386	5.5.0-3	286,0 kB	1.236,0 kB	[overzicht]
m68k (unofficial port)	5.5.0-3	286,0 kB	1.236,0 kB	[overzicht]
ppc64 (unofficial port)	5.5.0-2	286,0 kB	1.236,0 kB	[overzicht]
sh4 (unofficial port)	5.5.0-3	286,0 kB	1.236,0 kB	[overzicht]