Pakket: circlator (1.5.6-5)

[ Bron: circlator  ]

circularize genome assemblies

Circlator is a tool to automate assembly circularization for bacterial and small eukaryotic genomes and produce accurate linear representations of circular sequences.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::python, Role: Program, Wetenschap: science::calculation, works-with::biological-sequence, Works with: Bestanden

Andere aan circlator gerelateerde pakketten

• dep: bwa (>= 0.7.12)

  Burrows-Wheeler Aligner

• dep: canu

  single molecule sequence assembler for genomes

• dep: fastaq (>= 3.12.1)

  FASTA and FASTQ file manipulation tools

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-openpyxl

  Python 3 module to read/write OpenXML xlsx/xlsm files

• dep: python3-pymummer

  Python 3 interface to MUMmer

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: spades

  genome assembler for single-cell and isolates data sets

circlator downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	4.369,4 kB	10.531,0 kB	[overzicht]