[ Source: circlator ]
Paketti: circlator (1.5.6-5)
Links for circlator
Debian-palvelut:
Imuroi lähdekoodipaketti circlator:
Ylläpitäjät:
External Resources:
- Kotisivu [sanger-pathogens.github.io]
Samankaltaisia paketteja:
circularize genome assemblies
Circlator is a tool to automate assembly circularization for bacterial and small eukaryotic genomes and produce accurate linear representations of circular sequences.
Muut pakettiin circlator liittyvät paketit
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- dep: bwa (>= 0.7.12)
- Burrows-Wheeler Aligner
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- dep: canu
- single molecule sequence assembler for genomes
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- dep: fastaq (>= 3.12.1)
- FASTA and FASTQ file manipulation tools
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: prodigal
- Microbial (bacterial and archaeal) gene finding program
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-openpyxl
- Python 3 module to read/write OpenXML xlsx/xlsm files
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- dep: python3-pymummer
- Python 3 interface to MUMmer
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: spades
- genome assembler for single-cell and isolates data sets
Imuroi circlator
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
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amd64 | 4,369.4 kt | 10,531.0 kt | [tiedostoluettelo] |