Pakket: prodigal (1:2.6.3-4)

[ Bron: prodigal  ]

Microbial (bacterial and archaeal) gene finding program

Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include:

Speed: Prodigal is an extremely fast gene recognition tool (written in very vanilla C). It can analyze an entire microbial genome in 30 seconds or less.

Accuracy: Prodigal is a highly accurate gene finder. It correctly locates the 3' end of every gene in the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enables it to locate the translation initiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly).

Specificity: Prodigal's false positive rate compares favorably with other gene identification programs, and usually falls under 5%.

GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations.

Metagenomic Version: Prodigal can run in metagenomic mode and analyze sequences even when the organism is unknown.

Ease of Use: Prodigal can be run in one step on a single genomic sequence or on a draft genome containing many sequences. It does not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own.

Andere aan prodigal gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [niet amd64, arm64, ppc64el]

prodigal downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	678,3 kB	11.928,0 kB	[overzicht]
arm64	917,5 kB	11.312,0 kB	[overzicht]
armel	856,6 kB	12.368,0 kB	[overzicht]
armhf	750,9 kB	12.588,0 kB	[overzicht]
i386	724,0 kB	11.936,0 kB	[overzicht]
mips64el	875,2 kB	11.426,0 kB	[overzicht]
mipsel	903,1 kB	11.517,0 kB	[overzicht]
ppc64el	1.124,7 kB	13.001,0 kB	[overzicht]
s390x	539,8 kB	13.180,0 kB	[overzicht]