Package: provean (1.1.5+ds-4 and others)

[ Source: provean  ]

Protein Variation Effect Analyzer

PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.

PROVEAN is useful for filtering sequence variants to identify nonsynonymous or indel variants that are predicted to be functionally important.

The performance of PROVEAN is comparable to popular tools such as SIFT or PolyPhen-2.

A fast computation approach to obtain pairwise sequence alignment scores enabled the generation of precomputed PROVEAN predictions for 20 single AA substitutions and a single AA deletion at every amino acid position of all protein sequences in human and mouse.

Other Packages Related to provean

• dep: cd-hit [not alpha, ia64]

  suite of programs designed to quickly group sequences

• dep: libc6 (>= 2.38) [not alpha, ia64, loong64, sh4]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.41) [loong64, sh4]

• dep: libc6.1 (>= 2.33) [ia64]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, loong64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC 기능 지원 라이브러리

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 기능 지원 라이브러리

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 기능 지원 라이브러리

• dep: libstdc++6 (>= 13.1) [not alpha, ia64]

  GNU 표준 C++ 라이브러리 v3

  dep: libstdc++6 (>= 5.2) [alpha, ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: ncbi-blast+ [not alpha, ia64]

  next generation suite of BLAST sequence search tools

Download provean

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1.5+ds-2	51.0 kB	161.0 kB	[list of files]
amd64	1.1.5+ds-4	51.0 kB	149.0 kB	[list of files]
arm64	1.1.5+ds-4	44.8 kB	153.0 kB	[list of files]
armel	1.1.5+ds-4	45.4 kB	152.0 kB	[list of files]
armhf	1.1.5+ds-4	47.4 kB	152.0 kB	[list of files]
hppa (unofficial port)	1.1.5+ds-4	49.6 kB	133.0 kB	[list of files]
i386	1.1.5+ds-4	52.3 kB	144.0 kB	[list of files]
ia64 (unofficial port)	1.1.5+ds-2	61.8 kB	228.0 kB	[list of files]
loong64 (unofficial port)	1.1.5+ds-4	46.7 kB	153.0 kB	[list of files]
m68k (unofficial port)	1.1.5+ds-4	42.0 kB	128.0 kB	[list of files]
mips64el	1.1.5+ds-4	49.5 kB	222.0 kB	[list of files]
ppc64 (unofficial port)	1.1.5+ds-4	48.5 kB	218.0 kB	[list of files]
ppc64el	1.1.5+ds-4	49.2 kB	153.0 kB	[list of files]
riscv64	1.1.5+ds-4	48.1 kB	113.0 kB	[list of files]
s390x	1.1.5+ds-4	50.3 kB	141.0 kB	[list of files]
sh4 (unofficial port)	1.1.5+ds-4	52.0 kB	152.0 kB	[list of files]
sparc64 (unofficial port)	1.1.5+ds-4	42.2 kB	1,051.0 kB	[list of files]
x32 (unofficial port)	1.1.5+ds-4	49.3 kB	136.0 kB	[list of files]