Package: fastml (3.11-4 and others)
Links for fastml
Debian Resources:
Download Source Package fastml:
Maintainers:
External Resources:
- Homepage [fastml.tau.ac.il]
Similar packages:
maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).
Other Packages Related to fastml
|
|
|
|
-
- dep: libc6 (>= 2.34) [not alpha, arm64, ia64, sh4]
- GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.38) [arm64]
-
- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
-
- dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]
- GCC 기능 지원 라이브러리
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
-
- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 기능 지원 라이브러리
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 기능 지원 라이브러리
-
- dep: libstdc++6 (>= 13.1)
- GNU 표준 C++ 라이브러리 v3
-
- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
Download fastml
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 3.11-4 | 811.5 kB | 3,999.0 kB | [list of files] |
| amd64 | 3.11-4 | 925.6 kB | 3,474.0 kB | [list of files] |
| arm64 | 3.11-4+b1 | 806.9 kB | 3,355.0 kB | [list of files] |
| armel | 3.11-4 | 771.6 kB | 3,195.0 kB | [list of files] |
| armhf | 3.11-4 | 769.9 kB | 2,187.0 kB | [list of files] |
| hppa (unofficial port) | 3.11-4 | 818.6 kB | 3,237.0 kB | [list of files] |
| i386 | 3.11-4 | 939.9 kB | 3,547.0 kB | [list of files] |
| ia64 (unofficial port) | 3.11-4 | 1,023.3 kB | 7,140.0 kB | [list of files] |
| m68k (unofficial port) | 3.11-4 | 833.8 kB | 3,359.0 kB | [list of files] |
| mips64el | 3.11-4 | 768.4 kB | 4,153.0 kB | [list of files] |
| ppc64 (unofficial port) | 3.11-4 | 863.6 kB | 4,250.0 kB | [list of files] |
| ppc64el | 3.11-4 | 880.4 kB | 4,058.0 kB | [list of files] |
| riscv64 | 3.11-4 | 880.2 kB | 2,502.0 kB | [list of files] |
| s390x | 3.11-4 | 913.6 kB | 3,634.0 kB | [list of files] |
| sh4 (unofficial port) | 3.11-4 | 1,026.7 kB | 3,163.0 kB | [list of files] |
| sparc64 (unofficial port) | 3.11-4 | 700.2 kB | 5,156.0 kB | [list of files] |
| x32 (unofficial port) | 3.11-4 | 931.8 kB | 3,327.0 kB | [list of files] |