软件包：fastml（3.11-4 以及其他的）
maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).
其他与 fastml 有关的软件包
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- dep: libc6 (>= 2.34) [除 alpha, arm64, ia64, sh4]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.38) [arm64]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支持库
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支持库
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
下载 fastml
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| alpha （非官方移植版） | 3.11-4 | 811.5 kB | 3,999.0 kB | [文件列表] |
| amd64 | 3.11-4 | 925.6 kB | 3,474.0 kB | [文件列表] |
| arm64 | 3.11-4+b1 | 806.9 kB | 3,355.0 kB | [文件列表] |
| armel | 3.11-4 | 771.6 kB | 3,195.0 kB | [文件列表] |
| armhf | 3.11-4 | 769.9 kB | 2,187.0 kB | [文件列表] |
| hppa （非官方移植版） | 3.11-4 | 818.6 kB | 3,237.0 kB | [文件列表] |
| i386 | 3.11-4 | 939.9 kB | 3,547.0 kB | [文件列表] |
| ia64 （非官方移植版） | 3.11-4 | 1,023.3 kB | 7,140.0 kB | [文件列表] |
| m68k （非官方移植版） | 3.11-4 | 833.8 kB | 3,359.0 kB | [文件列表] |
| mips64el | 3.11-4 | 768.4 kB | 4,153.0 kB | [文件列表] |
| ppc64 （非官方移植版） | 3.11-4 | 863.6 kB | 4,250.0 kB | [文件列表] |
| ppc64el | 3.11-4 | 880.4 kB | 4,058.0 kB | [文件列表] |
| riscv64 | 3.11-4 | 880.2 kB | 2,502.0 kB | [文件列表] |
| s390x | 3.11-4 | 913.6 kB | 3,634.0 kB | [文件列表] |
| sh4 （非官方移植版） | 3.11-4 | 1,026.7 kB | 3,163.0 kB | [文件列表] |
| sparc64 （非官方移植版） | 3.11-4 | 700.2 kB | 5,156.0 kB | [文件列表] |
| x32 （非官方移植版） | 3.11-4 | 931.8 kB | 3,327.0 kB | [文件列表] |