Package: canu (1.8+dfsg-2)

[ Source: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Other Packages Related to canu

• dep: gnuplot

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.14)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc1 (>= 1:3.0)

  GCC 기능 지원 라이브러리

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) 지원 라이브러리

• dep: libstdc++6 (>= 5.2)

  GNU 표준 C++ 라이브러리 v3

• dep: mhap (>= 2.1.3)

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  래리 월의 Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus

  Pacific Biosciences variant and consensus caller

Download canu

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,971.5 kB	12,736.0 kB	[list of files]