Package: ampliconnoise (1.29-15 and others)

[ Source: ampliconnoise  ]

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Tags: Role: Program

Other Packages Related to ampliconnoise

• dep: libc6 (>= 2.34)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library (GSL) -- library package

• dep: libmpich12 [armel, armhf, i386]

  Shared libraries for MPICH

• dep: libopenmpi40 (>= 5.0.6) [not armel, armhf, i386]

  high performance message passing library -- shared library

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: mpi-default-bin

  Standard MPI runtime programs (metapackage)

Download ampliconnoise

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.29-15+b1	1,084.5 kB	2,052.0 kB	[list of files]
arm64	1.29-15+b1	1,073.3 kB	2,400.0 kB	[list of files]
armel	1.29-15	1,064.2 kB	1,966.0 kB	[list of files]
armhf	1.29-15	1,059.0 kB	1,834.0 kB	[list of files]
i386	1.29-15	1,081.3 kB	2,046.0 kB	[list of files]
mips64el	1.29-15+b1	1,072.8 kB	2,422.0 kB	[list of files]
ppc64el	1.29-15+b1	1,092.7 kB	2,592.0 kB	[list of files]
riscv64	1.29-15+b1	1,079.0 kB	1,912.0 kB	[list of files]
s390x	1.29-15+b1	1,097.6 kB	2,108.0 kB	[list of files]