Package: ampliconnoise (1.29-8)

[ Source: ampliconnoise  ]

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Tags: Role: Program

Other Packages Related to ampliconnoise

• dep: libc6 (>= 2.14) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgsl23 (>= 2.5)

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.4)

  GNU Scientific Library (GSL) -- blas library package

• dep: libopenmpi3

  high performance message passing library -- shared library

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: openmpi-bin

  high performance message passing library -- binaries

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armhf	446.3 kB	1,214.0 kB	[list of files]
i386	463.8 kB	1,402.0 kB	[list of files]