Package: tree-puzzle (5.3~rc16+dfsg-11 and others)

[ Source: tree-puzzle  ]

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Other Packages Related to tree-puzzle

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Package not available

Download tree-puzzle

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.3~rc16+dfsg-11	166.9 kB	492.0 kB	[list of files]
amd64	5.3~rc16+dfsg-11	166.0 kB	400.0 kB	[list of files]
arm64	5.3~rc16+dfsg-11	152.0 kB	428.0 kB	[list of files]
armel	5.3~rc16+dfsg-11	161.2 kB	411.0 kB	[list of files]
armhf	5.3~rc16+dfsg-11	151.7 kB	303.0 kB	[list of files]
hppa (unofficial port)	5.3~rc16+dfsg-11	158.1 kB	400.0 kB	[list of files]
i386	5.3~rc16+dfsg-11	179.1 kB	491.0 kB	[list of files]
ia64 (unofficial port)	5.3~rc16+dfsg-9+b1	214.9 kB	785.0 kB	[list of files]
m68k (unofficial port)	5.3~rc16+dfsg-11	152.1 kB	411.0 kB	[list of files]
mips64el	5.3~rc16+dfsg-11	165.2 kB	507.0 kB	[list of files]
ppc64 (unofficial port)	5.3~rc16+dfsg-11	177.8 kB	492.0 kB	[list of files]
ppc64el	5.3~rc16+dfsg-11	175.7 kB	492.0 kB	[list of files]
riscv64	5.3~rc16+dfsg-11	168.8 kB	348.0 kB	[list of files]
s390x	5.3~rc16+dfsg-11	176.7 kB	439.0 kB	[list of files]
sh4 (unofficial port)	5.3~rc16+dfsg-11	178.3 kB	364.0 kB	[list of files]
sparc64 (unofficial port)	5.3~rc16+dfsg-11	153.0 kB	1,069.0 kB	[list of files]
x32 (unofficial port)	5.3~rc16+dfsg-11	162.5 kB	383.0 kB	[list of files]