Package: tvc (5.0.3+git20151221.80e144e+dfsg-2)

[ Source: tvc  ]

genetic variant caller for Ion Torrent sequencing platforms

Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions.

Other Packages Related to tvc

• dep: libarmadillo9 (>= 1:9.200.6+dfsg)

  streamlined C++ linear algebra library

• dep: libbamtools2.5.1

  dynamic library for manipulating BAM (genome alignment) files

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base

• dep: libc6 (>= 2.27)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libgcc1 (>= 1:3.0) [amd64, i386]

  GCC támogató programkönyvtár

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.5) [arm64]

• dep: libjsoncpp1 (>= 1.7.4)

  library for reading and writing JSON for C++

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas-base

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

Download tvc

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,033.9 kB	3,316.0 kB	[list of files]
arm64	966.0 kB	3,117.0 kB	[list of files]
armhf	935.2 kB	2,581.0 kB	[list of files]
i386	1,064.7 kB	3,372.0 kB	[list of files]