Paket: maffilter (1.3.1+dfsg-1 und andere)

[ Quellcode: maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Andere Pakete mit Bezug zu maffilter

• dep: libboost-iostreams1.67.0

  Boost.Iostreams-Bibliothek

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  C++-Bibliothek für reguläre Ausdrücke

• dep: libbpp-core4 [nicht amd64]

  Bio++ Core library

  dep: libbpp-core4 (>= 2.4.1) [amd64]

• dep: libbpp-phyl-omics3 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12 [nicht amd64]

  Bio++ Phylogenetic library

  dep: libbpp-phyl12 (>= 2.4.1) [amd64]

• dep: libbpp-seq-omics3 [nicht amd64]

  Bio++ Sequence library: genomics components

  dep: libbpp-seq-omics3 (>= 2.4.1) [amd64]

• dep: libbpp-seq12 [nicht amd64]

  Bio++ Sequence library

  dep: libbpp-seq12 (>= 2.4.1) [amd64]

• dep: libbz2-1.0

  Hochwertiger, Blöcke sortierender Dateikomprimierer - Laufzeitbibliothek

• dep: libc6 (>= 2.1.3) [i386]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf]

• dep: libgcc1 (>= 1:3.0) [nicht armhf]

  GCC Support-Bibliothek

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

maffilter herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	1.3.1+dfsg-1+b1	210,3 kB	847,0 kB	[Liste der Dateien]
arm64	1.3.1+dfsg-1+b1	189,9 kB	795,0 kB	[Liste der Dateien]
armhf	1.3.1+dfsg-1+b1	179,7 kB	554,0 kB	[Liste der Dateien]
i386	1.3.1+dfsg-1+b1	213,4 kB	806,0 kB	[Liste der Dateien]