Package: libhts3 (1.16+ds-3)

[ Source: htslib  ]

C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

Tags: Role: Shared Library

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• dep: libcurl3-gnutls (>= 7.18.0)

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• dep: libdeflate0 (>= 1.0)

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• dep: liblzma5 (>= 5.1.1alpha+20120614)

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