Paquet : fastahack (1.0.0+dfsg-7)
Liens pour fastahack
Ressources Debian :
- Rapports de bogues
- Developer Information
- Journal des modifications Debian
- Fichier de licence
- Suivis des correctifs pour Debian
Télécharger le paquet source libfastahack :
- [libfastahack_1.0.0+dfsg-7.dsc]
- [libfastahack_1.0.0+dfsg.orig.tar.xz]
- [libfastahack_1.0.0+dfsg-7.debian.tar.xz]
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Autres paquets associés à fastahack
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- dep: libc6 (>= 2.14) [amd64]
- bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [non amd64, arm64, ppc64el]
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]
- library for indexing and sequence extraction from FASTA files (lib)
- dep: libfastahack0 (>= 1.0.0+dfsg) [non amd64, arm64, mips64el, ppc64el]
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- dep: libgcc-s1 (>= 3.0) [non armel, armhf]
- bibliothèque de prise en charge de GCC
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 5.2)
- bibliothèque standard C++ de GNU v3
Télécharger fastahack
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 12,1 ko | 40,0 ko | [liste des fichiers] |
arm64 | 11,5 ko | 40,0 ko | [liste des fichiers] |
armel | 11,5 ko | 35,0 ko | [liste des fichiers] |
armhf | 11,5 ko | 35,0 ko | [liste des fichiers] |
i386 | 12,5 ko | 43,0 ko | [liste des fichiers] |
mips64el | 11,8 ko | 41,0 ko | [liste des fichiers] |
mipsel | 11,8 ko | 40,0 ko | [liste des fichiers] |
ppc64el | 12,1 ko | 84,0 ko | [liste des fichiers] |
s390x | 11,7 ko | 40,0 ko | [liste des fichiers] |