Paketti: fastahack (1.0.0+dfsg-7)
Links for fastahack
Debian-palvelut:
Imuroi lähdekoodipaketti libfastahack:
- [libfastahack_1.0.0+dfsg-7.dsc]
- [libfastahack_1.0.0+dfsg.orig.tar.xz]
- [libfastahack_1.0.0+dfsg-7.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Muut pakettiin fastahack liittyvät paketit
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- dep: libc6 (>= 2.14) [amd64]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [ei amd64, arm64, ppc64el]
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]
- library for indexing and sequence extraction from FASTA files (lib)
- dep: libfastahack0 (>= 1.0.0+dfsg) [ei amd64, arm64, mips64el, ppc64el]
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- dep: libgcc-s1 (>= 3.0) [ei armel, armhf]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 5.2)
- GNU standardi C++ -kirjasto, versio 3
Imuroi fastahack
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
---|---|---|---|
amd64 | 12.1 kt | 40.0 kt | [tiedostoluettelo] |
arm64 | 11.5 kt | 40.0 kt | [tiedostoluettelo] |
armel | 11.5 kt | 35.0 kt | [tiedostoluettelo] |
armhf | 11.5 kt | 35.0 kt | [tiedostoluettelo] |
i386 | 12.5 kt | 43.0 kt | [tiedostoluettelo] |
mips64el | 11.8 kt | 41.0 kt | [tiedostoluettelo] |
mipsel | 11.8 kt | 40.0 kt | [tiedostoluettelo] |
ppc64el | 12.1 kt | 84.0 kt | [tiedostoluettelo] |
s390x | 11.7 kt | 40.0 kt | [tiedostoluettelo] |