Paketti: trf (4.09.1-6 ja muut)

[ Source: trf  ]

locate and display tandem repeats in DNA sequences

A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.

Muut pakettiin trf liittyvät paketit

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

Imuroi trf

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	4.09.1-6	56.9 kt	167.0 kt	[tiedostoluettelo]
arm64	4.09.1-6+b1	53.5 kt	184.0 kt	[tiedostoluettelo]
armel	4.09.1-6	55.4 kt	182.0 kt	[tiedostoluettelo]
armhf	4.09.1-6	53.0 kt	182.0 kt	[tiedostoluettelo]
i386	4.09.1-6	55.7 kt	166.0 kt	[tiedostoluettelo]
mips64el	4.09.1-6	55.3 kt	187.0 kt	[tiedostoluettelo]
ppc64el	4.09.1-6	58.0 kt	183.0 kt	[tiedostoluettelo]
riscv64	4.09.1-6+b1	55.4 kt	148.0 kt	[tiedostoluettelo]
s390x	4.09.1-6	53.8 kt	163.0 kt	[tiedostoluettelo]