软件包：trf（4.09.1-6 以及其他的）
locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.
下载 trf
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| amd64 | 4.09.1-6 | 56.9 kB | 167.0 kB | [文件列表] |
| arm64 | 4.09.1-6+b1 | 53.5 kB | 184.0 kB | [文件列表] |
| armel | 4.09.1-6 | 55.4 kB | 182.0 kB | [文件列表] |
| armhf | 4.09.1-6 | 53.0 kB | 182.0 kB | [文件列表] |
| i386 | 4.09.1-6 | 55.7 kB | 166.0 kB | [文件列表] |
| mips64el | 4.09.1-6 | 55.3 kB | 187.0 kB | [文件列表] |
| ppc64el | 4.09.1-6 | 58.0 kB | 183.0 kB | [文件列表] |
| riscv64 | 4.09.1-6+b1 | 55.4 kB | 148.0 kB | [文件列表] |
| s390x | 4.09.1-6 | 53.8 kB | 163.0 kB | [文件列表] |