Package: ska (1.0+dfsg-4)

[ Source: ska  ]

Split Kmer Analysis

SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary.

Other Packages Related to ska

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  Biblioteca de C de GNU: Bibliotecas compartidas
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  Biblioteca de C de GNU: Bibliotecas compartidas
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  Biblioteca de ayuda de GCC

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, ppc64, riscv64, sh4, sparc64, x32]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  Biblioteca de ayuda de GCC

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  Biblioteca de ayuda de GCC

• dep: libstdc++6 (>= 13.1)

  biblioteca estándar de C++ de GNU v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

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Download ska

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	133.7 kB	543.0 kB	[list of files]
amd64	143.9 kB	451.0 kB	[list of files]
arm64	121.9 kB	415.0 kB	[list of files]
armel	119.9 kB	394.0 kB	[list of files]
armhf	124.9 kB	314.0 kB	[list of files]
hppa (unofficial port)	138.9 kB	436.0 kB	[list of files]
i386	149.6 kB	482.0 kB	[list of files]
ia64 (unofficial port)	175.0 kB	846.0 kB	[list of files]
m68k (unofficial port)	117.8 kB	422.0 kB	[list of files]
mips64el	125.3 kB	514.0 kB	[list of files]
ppc64 (unofficial port)	138.2 kB	545.0 kB	[list of files]
ppc64el	138.4 kB	543.0 kB	[list of files]
riscv64	140.4 kB	363.0 kB	[list of files]
s390x	142.4 kB	463.0 kB	[list of files]
sh4 (unofficial port)	148.8 kB	414.0 kB	[list of files]
sparc64 (unofficial port)	118.6 kB	1,122.0 kB	[list of files]
x32 (unofficial port)	138.5 kB	426.0 kB	[list of files]