Package: sra-toolkit (3.0.9+dfsg-7 and others)
Links for sra-toolkit
Debian Resources:
Download Source Package sra-sdk:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Charles Plessy (QA Page)
- Andreas Tille (QA Page)
- Aaron M. Ucko (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.
Other tools distributed in this package are:
abi-dump, abi-load align-info bam-load cache-mgr cg-load copycat fasterq-dump fastq-dump, fastq-load helicos-load illumina-dump, illumina-load kar kdbmeta latf-load pacbio-load prefetch rcexplain remote-fuser sff-dump, sff-load sra-pileup, sra-sort, sra-stat, srapath srf-load test-sra vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock, vdb-passwd, vdb-unlock, vdb-validate
The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.
Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.
Other Packages Related to sra-toolkit
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- dep: libbz2-1.0 [x32]
- high-quality block-sorting file compressor library - runtime
-
- dep: libc6 (>= 2.16) [x32]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.38) [not x32]
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 4.5) [arm64]
-
- dep: libhdf5-310 (>= 1.14.3) [not x32]
- HDF5 C runtime files - serial version
-
- dep: libmagic1t64 (>= 5.12) [not x32]
- Recognize the type of data in a file using "magic" numbers - library
-
- dep: libncbi-vdb3 (>= 3.0.9+dfsg) [not x32]
- libraries for using data in the INSDC Sequence Read Archives
-
- dep: libncbi-wvdb3 (>= 3.0.9+dfsg) [not x32]
- virtual layer update module of ncbi-vdb library
-
- dep: libstdc++6 (>= 14) [not x32]
- GNU Standard C++ Library v3
-
- dep: libxml2 (>= 2.6.27) [x32]
- GNOME XML library
- dep: libxml2 (>= 2.7.4) [not x32]
-
- dep: sra-toolkit-libs0 [x32]
- Libraries for the SRA Toolkit
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- dep: zlib1g (>= 1:1.1.4) [x32]
- compression library - runtime
- dep: zlib1g (>= 1:1.2.2) [not x32]
-
- rec: med-config
- Debian Med general config package
Download sra-toolkit
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 3.0.9+dfsg-7+b1 | 6,367.3 kB | 16,603.0 kB | [list of files] |
| arm64 | 3.0.9+dfsg-7+b1 | 6,198.8 kB | 18,304.0 kB | [list of files] |
| x32 (unofficial port) | 2.3.5-2+dfsg-1 | 891.0 kB | 4,605.0 kB | [list of files] |