Package: sra-toolkit (3.0.3+dfsg-6~deb12u1)

[ Source: sra-sdk  ]

utilities for the NCBI Sequence Read Archive

Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.

The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.

Other tools distributed in this package are:

 abi-dump, abi-load
 align-info
 bam-load
 cache-mgr
 cg-load
 copycat
 fasterq-dump
 fastq-dump, fastq-load
 helicos-load
 illumina-dump, illumina-load
 kar
 kdbmeta
 latf-load
 pacbio-load
 prefetch
 rcexplain
 remote-fuser
 sff-dump, sff-load
 sra-pileup, sra-sort, sra-stat, srapath
 srf-load
 test-sra
 vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,
 vdb-passwd, vdb-unlock, vdb-validate

The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.

Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.

Other Packages Related to sra-toolkit

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64]

  GCC support library

  dep: libgcc-s1 (>= 4.5) [arm64]

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libmagic1 (>= 5.12)

  Recognize the type of data in a file using "magic" numbers - library

• dep: libncbi-vdb3 (>= 3.0.2+dfsg)

  libraries for using data in the INSDC Sequence Read Archives

• dep: libncbi-wvdb3 (>= 3.0.2+dfsg)

  virtual layer update module of ncbi-vdb library

• dep: libre2-9 (>= 20201101+dfsg)

  efficient, principled regular expression library

• dep: libssl3 (>= 3.0.0)

  Secure Sockets Layer toolkit - shared libraries

• dep: libstdc++6 (>= 12)

  GNU Standard C++ Library v3

• dep: libxml2 (>= 2.7.4)

  GNOME XML library

• dep: zlib1g (>= 1:1.2.2)

  compression library - runtime

• rec: med-config

  Debian Med general config package

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Architecture	Package Size	Installed Size	Files
amd64	6,597.4 kB	17,192.0 kB	[list of files]
arm64	6,388.5 kB	18,674.0 kB	[list of files]