Package: meryl (0~20150903+r2013-9 and others)

[ Source: kmer  ]

in- and out-of-core kmer counting and utilities

meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files.

This package is part of the Kmer suite.

Other Packages Related to meryl

• dep: libc6 (>= 2.38) [not alpha, ia64, loong64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.36) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 4.1.1) [not ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5) [ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: gridengine-client

  Utilities for Grid Engine queue management

Download meryl

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0~20150903+r2013-9+b1	209.2 kB	1,706.0 kB	[list of files]
amd64	0~20150903+r2013-9+b1	195.8 kB	1,458.0 kB	[list of files]
arm64	0~20150903+r2013-9+b1	189.4 kB	1,572.0 kB	[list of files]
armel	0~20150903+r2013-9+b1	201.0 kB	1,635.0 kB	[list of files]
armhf	0~20150903+r2013-9+b1	200.7 kB	1,379.0 kB	[list of files]
hppa (unofficial port)	0~20150903+r2013-9+b1	281.6 kB	2,022.0 kB	[list of files]
i386	0~20150903+r2013-9+b1	233.7 kB	1,835.0 kB	[list of files]
ia64 (unofficial port)	0~20150903+r2013-8+b3	268.4 kB	2,565.0 kB	[list of files]
loong64 (unofficial port)	0~20150903+r2013-9+b1	194.4 kB	1,635.0 kB	[list of files]
m68k (unofficial port)	0~20150903+r2013-9+b1	244.2 kB	1,939.0 kB	[list of files]
mips64el	0~20150903+r2013-9+b1	213.3 kB	1,821.0 kB	[list of files]
ppc64 (unofficial port)	0~20150903+r2013-9+b1	203.3 kB	1,834.0 kB	[list of files]
ppc64el	0~20150903+r2013-9+b1	209.9 kB	1,765.0 kB	[list of files]
riscv64	0~20150903+r2013-9+b1	213.9 kB	1,286.0 kB	[list of files]
s390x	0~20150903+r2013-9+b1	178.7 kB	1,483.0 kB	[list of files]
sh4 (unofficial port)	0~20150903+r2013-9+b1	280.7 kB	1,891.0 kB	[list of files]
sparc64 (unofficial port)	0~20150903+r2013-9+b1	179.6 kB	7,480.0 kB	[list of files]
x32 (unofficial port)	0~20150903+r2013-9+b1	199.3 kB	1,455.0 kB	[list of files]