Package: abyss (2.3.5+dfsg-2) [debports]

[ Source:  ]

de novo, parallel, sequence assembler for short reads

ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.

Other Packages Related to abyss

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6.1 (>= 2.33)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libopenmpi3 (>= 4.1.4)

  high performance message passing library -- shared library

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 12)

  GNU Standard C++ Library v3

• dep: make

  utility for directing compilation

• dep: openmpi-bin

  high performance message passing library -- binaries

• dep: openmpi-common

  high performance message passing library -- common files

• dep: perl

  Larry Wall's Practical Extraction and Report Language

Download abyss

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	3,091.4 kB	12,135.0 kB	[list of files]