Package: tabix (1.21+ds-0+exp2)

[ Source: htslib  ]

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

Other Packages Related to tabix

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34) [not alpha, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libdeflate0 (>= 1.0)

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: libhtscodecs2 (>= 1.3.0)

  Custom compression for CRAM and others

• dep: liblzma5 (>= 5.1.1alpha+20120614)

  XZ-format compression library

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download tabix

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	487.7 kB	2,703.0 kB	[list of files]
amd64	483.6 kB	2,328.0 kB	[list of files]
arm64	449.0 kB	2,316.0 kB	[list of files]
armel	411.2 kB	2,089.0 kB	[list of files]
armhf	414.3 kB	1,517.0 kB	[list of files]
hppa (unofficial port)	466.6 kB	2,305.0 kB	[list of files]
i386	528.3 kB	2,629.0 kB	[list of files]
m68k (unofficial port)	432.5 kB	2,081.0 kB	[list of files]
mips64el	440.5 kB	2,685.0 kB	[list of files]
ppc64 (unofficial port)	499.5 kB	3,148.0 kB	[list of files]
ppc64el	517.1 kB	3,084.0 kB	[list of files]
riscv64	497.4 kB	1,920.0 kB	[list of files]
s390x	472.1 kB	2,504.0 kB	[list of files]
sh4 (unofficial port)	500.4 kB	2,060.0 kB	[list of files]
sparc64 (unofficial port)	406.8 kB	3,163.0 kB	[list of files]
x32 (unofficial port)	485.2 kB	2,281.0 kB	[list of files]