Package: toppred (1.10-10 and others)
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Forudsigelse af transmembrantopologi
Toppred er et program til at bestemme topologien for et transmembranprotein baseret på G. von Heijne-algoritmen.
Hver sekvens fra sekvensdata i formatet fasta behandles og toppred opretter Hydrophobycity-profilen for sekvensen og de tilsvarende hydrophobycities-værdier i filsekvensen sequence-ID.hydro.
Derudover, de forudsagte topologier repræsenteres som png-billeder. Hver topologi lagres i filen sequence-ID-number.png.
Hydrophobicity-profilen beregnes via et vindue formet af en kernerektangulært vinduesstørrelse på n, flankeret af to triangulære vinduer med størrelsen q. NB rektangulær og triangulær betyder at ponderationværdierne inden i disse vinduer er respektivt konstant og variabel.
Dette program er en ny implementering af det originale toppredprogram, baseret på G. von Heijne-algoritmen.
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Download toppred
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.10-10 | 44.3 kB | 229.0 kB | [list of files] |
| amd64 | 1.10-10 | 43.4 kB | 213.0 kB | [list of files] |
| arm64 | 1.10-10+b1 | 42.2 kB | 230.0 kB | [list of files] |
| armel | 1.10-10 | 42.8 kB | 228.0 kB | [list of files] |
| armhf | 1.10-10 | 40.4 kB | 228.0 kB | [list of files] |
| hppa (unofficial port) | 1.10-10 | 42.2 kB | 205.0 kB | [list of files] |
| i386 | 1.10-10 | 44.2 kB | 212.0 kB | [list of files] |
| ia64 (unofficial port) | 1.10-10 | 50.5 kB | 251.0 kB | [list of files] |
| m68k (unofficial port) | 1.10-10 | 41.7 kB | 212.0 kB | [list of files] |
| mips64el | 1.10-10 | 42.9 kB | 232.0 kB | [list of files] |
| ppc64 (unofficial port) | 1.10-10 | 45.3 kB | 229.0 kB | [list of files] |
| ppc64el | 1.10-10 | 45.7 kB | 229.0 kB | [list of files] |
| riscv64 | 1.10-10+b1 | 43.4 kB | 206.0 kB | [list of files] |
| s390x | 1.10-10 | 41.4 kB | 208.0 kB | [list of files] |
| sh4 (unofficial port) | 1.10-10 | 45.1 kB | 228.0 kB | [list of files] |
| sparc64 (unofficial port) | 1.10-10 | 41.1 kB | 1,190.0 kB | [list of files] |
| x32 (unofficial port) | 1.10-10 | 43.4 kB | 208.0 kB | [list of files] |