Package: infernal (1.1.5-2 and others)

[ Source: infernal  ]

Logisk slutning for RNA-sekundære struktursammenligninger

Infernal (»INFERence of RNA Alignment«) søger i DNA-sekvensdatabaser efter RNA-strukturer og sekvensligheder. Programmet tilbyder en implementering af et specielt tilfælde af profilstokastisk kontekstfri grammatik kaldt covariansmodeller (CM'er). En CM er som en sekvensprofil, men den scorer en kombination af sekvenskonsensus og RNA sekundær strukturkoncensus, så i mange tilfælde, er den bedre til at identificere RNA-homologer som bevarer deres sekundære struktur bedre end deres primære sekvens.

Værktøjet er en integreret komponent i Rfam-databasen.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Purpose: Analysing

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  dep: libc6 (>= 2.13) [ppc64, sh4]

  dep: libc6 (>= 2.3) [m68k, sparc64]

  dep: libc6 (>= 2.34) [amd64, arm64, i386, x32]

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Download infernal

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0.2-2	5,014.4 kB	10,940.0 kB	[list of files]
amd64	1.1.5-2	5,775.3 kB	51,445.0 kB	[list of files]
arm64	1.1.5-2	5,404.2 kB	49,554.0 kB	[list of files]
hppa (unofficial port)	1.0.2-1	4,144.2 kB	8,324.0 kB	[list of files]
i386	1.1.5-2	5,791.7 kB	56,163.0 kB	[list of files]
m68k (unofficial port)	1.0.2-2	3,371.3 kB	7,800.0 kB	[list of files]
ppc64 (unofficial port)	1.0.2-2	4,909.3 kB	11,058.0 kB	[list of files]
sh4 (unofficial port)	1.0.2-2	4,311.1 kB	7,876.0 kB	[list of files]
sparc64 (unofficial port)	1.0.2-2	4,465.1 kB	9,210.0 kB	[list of files]
x32 (unofficial port)	1.1.5-2	5,774.0 kB	50,402.0 kB	[list of files]