Package: python-biopython (1.73+dfsg-1)

[ Source: python-biopython  ]

Python library for bioinformatics (implemented in Python 2)

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project.

This package is targeting Python version 2.

Tags: Software Development: Python Development, Libraries, Field: field::biology, field::biology:bioinformatics, Implemented in: Python, Role: role::devel-lib, role::shared-lib

Other Packages Related to python-biopython

• dep: libc6 (>= 2.4)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: python

  interactive high-level object-oriented language (Python2 version)

  dep: python (<< 2.8)

  dep: python (>= 2.7~)

• dep: python-numpy (>= 1:1.16.0~rc1)

  Numerical Python adds a fast array facility to the Python language

• dep: python-numpy-abi9

  virtual package provided by python-numpy

• dep: python-reportlab

  ReportLab library to create PDF documents using Python

• rec: ncbi-blast+

  next generation suite of BLAST sequence search tools

• rec: python-biopython-doc (= 1.73+dfsg-1)

  Documentation for the Biopython library

• sug: clustalo

  General purpose multiple sequence alignment program for proteins

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: dialign

  Segment-based multiple sequence alignment

• sug: dssp

  protein secondary structure assignment based on 3D structure

• sug: emboss

  European molecular biology open software suite

• sug: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: muscle

  Multiple alignment program of protein sequences

• sug: phylip

  package of programs for inferring phylogenies

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: prank

  Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

• sug: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• sug: python-matplotlib

  Python based plotting system in a style similar to Matlab

• sug: python-mysqldb

  Python interface to MySQL

• sug: python-pil

  Python Imaging Library (Pillow fork)

• sug: python-psycopg2

  Python module for PostgreSQL

• sug: python-rdflib (>= 4)

  Python library containing an RDF triple store and RDF parsers/serializers

• sug: python-renderpm

  python low level render interface

• sug: python-scipy

  scientific tools for Python

• sug: python-tk

  Tkinter - Writing Tk applications with Python2

• sug: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• sug: t-coffee

  Multiple Sequence Alignment

• sug: w3-dtd-mathml

  Mathematical Markup Language V2.0 DTD

• sug: wise (>= 2.4.1-16)

  comparison of biopolymers, like DNA and protein sequences

Download python-biopython

Download for all available architectures

Architecture	Package Size	Installed Size	Files
armhf	1,282.2 kB	8,822.0 kB	[list of files]