Пакет: r-bioc-rsamtools (2.18.0+dfsg-1 и други) [debports]

[ Източник:  ]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Други пакети, свързани с r-bioc-rsamtools

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• dep: libc6.1 (>= 2.37)

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  също и виртуален пакет, предлаган от libc6.1-udeb

• dep: libcurl4 (>= 7.18.0)

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• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: liblzma5 (>= 5.1.1alpha+20120614)

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• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.18

  Пакетът не е наличен

• dep: r-bioc-biocgenerics (>= 0.25.1)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rhtslib (>= 1.99.3)

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-s4vectors (>= 0.17.25)

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• dep: r-bioc-xvector (>= 0.19.7)

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• dep: r-bioc-zlibbioc

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• dep: r-cran-bitops

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• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-shortread (>= 1.19.10)

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-knitr

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• sug: r-cran-runit

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Изтегляне на r-bioc-rsamtools

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
ia64 (неофициална архитектура)	2.18.0+dfsg-1+b1	3 636,0 кБ	6 843,0 кБ	[списък на файловете]