Пакет: canu (2.2+dfsg-5) [debports]

[ Източник:  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Други пакети, свързани с canu

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  също и виртуален пакет, предлаган от gnuplot-qt, gnuplot-x11

  или gnuplot

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• dep: libfilesys-df-perl

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• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libgomp1 (>= 6)

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• dep: libsnappy1v5 (>= 1.1.10)

  fast compression/decompression library

• dep: libstdc++6 (>= 11)

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• dep: libunwind8

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• dep: mhap

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

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