Пакет: proteinortho (6.1.7+dfsg-1)

[ Източник: proteinortho  ]

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Други пакети, свързани с proteinortho

• dep: diamond-aligner (>= 2.0.10~)

  accelerated BLAST compatible local sequence aligner

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

• dep: libstdc++6 (>= 12)

  GNU Standard C++ Library v3

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: procps

  /proc file system utilities

• dep: python3

  interactive high-level object-oriented language (default python3 version)

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