Пакет: kissplice (2.6.2-2)

[ Източник: kissplice  ]

Detection of various kinds of polymorphisms in RNA-seq data

KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.

Други пакети, свързани с kissplice

• dep: bcalm

  de Bruijn compaction in low memory

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	484,5 кБ	1 191,0 кБ	[списък на файловете]
arm64	472,5 кБ	1 371,0 кБ	[списък на файловете]
mips64el	480,2 кБ	1 467,0 кБ	[списък на файловете]
ppc64el	491,3 кБ	1 435,0 кБ	[списък на файловете]