[ trixie ]
[ sid ]
[ 原始碼： sourmash ]
套件：sourmash（4.8.14-3）
tools for comparing DNA sequences with MinHash sketches
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.
MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).
sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.
These tools provide functionality previously handled by the 'khmer' package.
其他與 sourmash 有關的套件
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libgcc-s1 (>= 4.2)
- GCC 支援函式庫
-
- dep: librocksdb9.10 (>= 9.10.0)
- persistent Key-Value Store for Flash and RAM Storage
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
-
- dep: python3-bitstring
- Python module for manipulation of binary data (Python 3)
-
- dep: python3-cachetools
- extensible memoizing collections and decorators for Python 3
-
- dep: python3-cffi-backend-api-max (>= 9729)
- 套件暫時不可用
-
- dep: python3-cffi-backend-api-min (<= 9729)
- 套件暫時不可用
-
- dep: python3-deprecation
- Library to handle automated deprecations
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
-
- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-screed
- short nucleotide read sequence utils in Python 3