套件：srst2（0.1.8-1） [debports]
Short Read Sequence Typing for Bacterial Pathogens
This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
其他與 srst2 有關的套件
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: python
- 套件暫時不可用
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- dep: python-biopython
- Python library for bioinformatics (implemented in Python 2)
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- dep: python-scipy
- 套件暫時不可用
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats