套件：bwa（0.7.18-1） [debports]
Burrows-Wheeler Aligner
BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.
其他與 bwa 有關的套件
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- dep: libc6 (>= 2.39)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: zlib1g (>= 1:1.2.3.3)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats