套件：circlator（1.5.6-11）

[ 原始碼： circlator  ]

circularize genome assemblies

Circlator is a tool to automate assembly circularization for bacterial and small eukaryotic genomes and produce accurate linear representations of circular sequences.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::python, 角色: 程式, 科學: science::calculation, works-with::biological-sequence, 處理: 檔案

其他與 circlator 有關的套件

• dep: bwa

  Burrows-Wheeler Aligner

• dep: canu

  single molecule sequence assembler for genomes

• dep: fastaq

  FASTA and FASTQ file manipulation tools

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-openpyxl

  Python 3 module to read/write OpenXML xlsx/xlsm files

• dep: python3-packaging

  core utilities for python3 packages

• dep: python3-pymummer

  Python 3 interface to MUMmer

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: spades

  genome assembler for single-cell and isolates data sets

下載 circlator

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
all	4，496。8 kB	11，642。0 kB	[檔案列表]