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[ 原始碼: r-bioc-dnacopy  ]

套件:r-bioc-dnacopy(1.80.0-1)

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警告:這個套件來自於 experimental 發行版。這表示它很有可能表現出不穩定或者出現 bug ,甚至是導致資料損失。請務必在使用之前查閱 changelog 以及其他潛在的文件。

R package: DNA copy number data analysis

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

This package is for analyzing array DNA copy number data, which is usually (but not always) called array Comparative Genomic Hybridization (array CGH) data It implements a methodology for finding change-points in these data which are points after which the (log) test over reference ratios have changed location. This model is that the change-points correspond to positions where the underlying DNA copy number has changed. Therefore, change-points can be used to identify regions of gained and lost copy number. Also provided is a function for making relevant plots of these data.

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