套件：r-cran-ape（5.4-1-1）

[ 原始碼： r-cran-ape  ]

GNU R package for Analyses of Phylogenetics and Evolution

This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.

標籤: 軟體開發: GNU 開發, 領域: 統計學, 實做語言: GNU R

其他與 r-cran-ape 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  或者 liblapack.so.3

  本虛擬套件由這些套件填實： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  本虛擬套件由這些套件填實： r-base-core

• dep: r-base-core (>= 4.0.2-1)

  GNU R core of statistical computation and graphics system

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-nlme

  GNU R package for (non-)linear mixed effects models

• dep: r-cran-rcpp (>= 0.12.0)

  GNU R package for Seamless R and C++ Integration

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: muscle

  Multiple alignment program of protein sequences

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: r-cran-expm

  GNU R Computation of the matrix exponential and related quantities

• sug: r-cran-gee

  Generalized Estimation Equation Solver

• sug: r-cran-igraph

  GNU R network analysis and visualization

• sug: t-coffee

  Multiple Sequence Alignment

下載 r-cran-ape

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	2，156。2 kB	2，509。0 kB	[檔案列表]
arm64	2，142。3 kB	2，481。0 kB	[檔案列表]
armel	2，140。1 kB	2，478。0 kB	[檔案列表]
armhf	2，137。5 kB	2，399。0 kB	[檔案列表]
i386	2，157。7 kB	2，503。0 kB	[檔案列表]
mips64el	2，145。1 kB	2，528。0 kB	[檔案列表]
mipsel	2，146。3 kB	2，514。0 kB	[檔案列表]
ppc64el	2，165。8 kB	2，565。0 kB	[檔案列表]
s390x	2，150。5 kB	2，529。0 kB	[檔案列表]