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[ 原始碼: r-cran-ape  ]

套件:r-cran-ape(5.4-1-1)

r-cran-ape 的相關連結

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GNU R package for Analyses of Phylogenetics and Evolution

This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.

標籤: 軟體開發: GNU 開發, 領域: 統計學, 實做語言: GNU R

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硬體架構 套件大小 安裝後大小 檔案
amd64 2,156。2 kB2,509。0 kB [檔案列表]
arm64 2,142。3 kB2,481。0 kB [檔案列表]
armel 2,140。1 kB2,478。0 kB [檔案列表]
armhf 2,137。5 kB2,399。0 kB [檔案列表]
i386 2,157。7 kB2,503。0 kB [檔案列表]
mips64el 2,145。1 kB2,528。0 kB [檔案列表]
mipsel 2,146。3 kB2,514。0 kB [檔案列表]
ppc64el 2,165。8 kB2,565。0 kB [檔案列表]
s390x 2,150。5 kB2,529。0 kB [檔案列表]