软件包：r-cran-ape（5.4-1-1）

[ 源代码： r-cran-ape  ]

GNU R package for Analyses of Phylogenetics and Evolution

This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.

标签: 软件开发: GNU 开发, 领域: 统计学, 实做语言: GNU R

其他与 r-cran-ape 有关的软件包

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支持库

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  或者 liblapack.so.3

  本虚包由这些包填实： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-base-core (>= 4.0.2-1)

  GNU R core of statistical computation and graphics system

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-nlme

  GNU R package for (non-)linear mixed effects models

• dep: r-cran-rcpp (>= 0.12.0)

  GNU R package for Seamless R and C++ Integration

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: muscle

  Multiple alignment program of protein sequences

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: r-cran-expm

  GNU R Computation of the matrix exponential and related quantities

• sug: r-cran-gee

  Generalized Estimation Equation Solver

• sug: r-cran-igraph

  GNU R network analysis and visualization

• sug: t-coffee

  Multiple Sequence Alignment

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硬件架构	软件包大小	安装后大小	文件
amd64	2,156.2 kB	2,509.0 kB	[文件列表]
arm64	2,142.3 kB	2,481.0 kB	[文件列表]
armel	2,140.1 kB	2,478.0 kB	[文件列表]
armhf	2,137.5 kB	2,399.0 kB	[文件列表]
i386	2,157.7 kB	2,503.0 kB	[文件列表]
mips64el	2,145.1 kB	2,528.0 kB	[文件列表]
mipsel	2,146.3 kB	2,514.0 kB	[文件列表]
ppc64el	2,165.8 kB	2,565.0 kB	[文件列表]
s390x	2,150.5 kB	2,529.0 kB	[文件列表]