套件：parsnp（1.5.4+dfsg-1）

[ 原始碼： parsnp  ]

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

其他與 parsnp 有關的套件

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: harvest-tools

  archiving and postprocessing for reference-compressed genomic multi-alignments

• dep: libc6 (>= 2.27)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: phipack

  PHI test and other tests of recombination

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• rec: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

下載 parsnp

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	185。2 kB	1，881。0 kB	[檔案列表]
arm64	174。9 kB	1，837。0 kB	[檔案列表]
armel	167。3 kB	1，836。0 kB	[檔案列表]
armhf	164。4 kB	1，760。0 kB	[檔案列表]
i386	188。3 kB	1，900。0 kB	[檔案列表]
mips64el	185。0 kB	1，927。0 kB	[檔案列表]
mipsel	187。4 kB	1，925。0 kB	[檔案列表]
ppc64el	197。4 kB	1，945。0 kB	[檔案列表]
s390x	169。9 kB	1，885。0 kB	[檔案列表]