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[ 原始碼: libfastahack  ]

套件:fastahack(1.0.0+dfsg-10)

fastahack 的相關連結

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下載原始碼套件 libfastahack

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utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

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下載 fastahack

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 12。4 kB44。0 kB [檔案列表]
arm64 11。9 kB84。0 kB [檔案列表]
armel 11。8 kB83。0 kB [檔案列表]
armhf 11。9 kB83。0 kB [檔案列表]
i386 12。7 kB43。0 kB [檔案列表]
mips64el 12。3 kB85。0 kB [檔案列表]
mipsel 12。2 kB84。0 kB [檔案列表]
ppc64el 12。5 kB148。0 kB [檔案列表]
s390x 12。0 kB40。0 kB [檔案列表]