Package: fastahack (1.0.0+dfsg-10)

[ Source: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Other Packages Related to fastahack

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [not amd64, arm64, mips64el, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

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Architecture	Package Size	Installed Size	Files
amd64	12.4 kB	44.0 kB	[list of files]
arm64	11.9 kB	84.0 kB	[list of files]
armel	11.8 kB	83.0 kB	[list of files]
armhf	11.9 kB	83.0 kB	[list of files]
i386	12.7 kB	43.0 kB	[list of files]
mips64el	12.3 kB	85.0 kB	[list of files]
mipsel	12.2 kB	84.0 kB	[list of files]
ppc64el	12.5 kB	148.0 kB	[list of files]
s390x	12.0 kB	40.0 kB	[list of files]