软件包：spades（3.13.0+dfsg2-2）

[ 源代码： spades  ]

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 实做语言: Python, 用户接口: interface::commandline, role::program, 范围: 实用程序, 处理: works-with::biological-sequence, works-with::file

其他与 spades 有关的软件包

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: bwa

  Burrows-Wheeler Aligner

• dep: libc6 (>= 2.27)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc1 (>= 1:4.0)

  GCC 支持库

• dep: libgomp1 (>= 4.9)

  GCC OpenMP（GOMP）支持库

• dep: libhat-trie0

  HAT-trie, an extremely efficient (space and time) modern variant of tries

• dep: libnlopt0 (>= 2.2.4)

  nonlinear optimization library

• dep: libssw0

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 6)

  GNU 标准 C++ 库，第3版

• dep: python

  交互式高级面向对象语言（Python2 版本）

• dep: python-joblib

  tools to provide lightweight pipelining in Python

• dep: python-yaml

  YAML parser and emitter for Python

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  压缩库 - 运行时

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硬件架构	软件包大小	安装后大小	文件
amd64	4,643.7 kB	23,056.0 kB	[文件列表]