软件包：physamp（1.1.0-2）

[ 源代码： physamp  ]

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

其他与 physamp 有关的软件包

• dep: libbpp-core4 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl12 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq12 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支持库

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 9) [除 armel, armhf]

下载 physamp

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	182.9 kB	1,778.0 kB	[文件列表]
arm64	175.2 kB	1,766.0 kB	[文件列表]
armel	169.9 kB	1,716.0 kB	[文件列表]
armhf	170.8 kB	1,660.0 kB	[文件列表]
i386	188.5 kB	1,764.0 kB	[文件列表]
mips64el	178.3 kB	1,832.0 kB	[文件列表]
mipsel	178.5 kB	1,808.0 kB	[文件列表]
ppc64el	186.2 kB	1,890.0 kB	[文件列表]
s390x	174.6 kB	1,782.0 kB	[文件列表]