Paket: physamp (1.1.0-2)

[ Källkod: physamp  ]

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

Andra paket besläktade med physamp

• dep: libbpp-core4 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl12 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq12 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 9) [ej armel, armhf]

Hämta physamp

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	182,9 kbyte	1.778,0 kbyte	[filförteckning]
arm64	175,2 kbyte	1.766,0 kbyte	[filförteckning]
armel	169,9 kbyte	1.716,0 kbyte	[filförteckning]
armhf	170,8 kbyte	1.660,0 kbyte	[filförteckning]
i386	188,5 kbyte	1.764,0 kbyte	[filförteckning]
mips64el	178,3 kbyte	1.832,0 kbyte	[filförteckning]
mipsel	178,5 kbyte	1.808,0 kbyte	[filförteckning]
ppc64el	186,2 kbyte	1.890,0 kbyte	[filförteckning]
s390x	174,6 kbyte	1.782,0 kbyte	[filförteckning]