软件包：r-bioc-tximeta（1.16.1+dfsg-1）

[ 源代码： r-bioc-tximeta  ]

Transcript Quantification Import with Automatic Metadata

Transcript quantification import from Salmon and alevin with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.

其他与 r-bioc-tximeta 有关的软件包

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.16

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• dep: r-bioc-biocfilecache

  GNU R management of files across sessions

• dep: r-bioc-biostrings

  GNU R string objects representing biological sequences

• dep: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

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• dep: r-bioc-tximport

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• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-matrix

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• dep: r-cran-tibble

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• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-fishpond

  Differential transcript and gene expression with inferential replicates

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-tximportdata

  GNU R various transcript abundance quantifiers

• sug: r-cran-devtools

  Tools to Make Developing R Packages Easier

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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