[ 源代码： unifrac-tools ]
软件包：unifrac-tools（1.2-2）
high-performance phylogenetic diversity calculations (binaries)
The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.
This package contains target binaries ssu and faithpd
其他与 unifrac-tools 有关的软件包
|
|
|
|
-
- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- 或者 libblas.so.3
- 本虚包由这些包填实： libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC 支持库
-
- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
-
- dep: liblapacke (>= 3.11.0)
- Library of linear algebra routines 3 - C lib shared version
-
- dep: liblz4-1 (>= 0.0~r130)
- 快速 LZ 压缩算法库 - 运行时
-
- dep: libssu0
- high-performance phylogenetic diversity calculations (lib)
-
- dep: libstdc++6 (>= 11)
- GNU 标准 C++ 库，第3版
-
- dep: libsz2 (>= 1.0.6)
- Adaptive Entropy Coding library - SZIP
-
- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时