Pakket: unifrac-tools (1.2-2)

[ Bron: unifrac-tools  ]

high-performance phylogenetic diversity calculations (binaries)

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains target binaries ssu and faithpd

Andere aan unifrac-tools gerelateerde pakketten

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC support bibliotheek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: liblapacke (>= 3.11.0)

  Library of linear algebra routines 3 - C lib shared version

• dep: liblz4-1 (>= 0.0~r130)

  Fast LZ compression algorithm library - runtime

• dep: libssu0

  high-performance phylogenetic diversity calculations (lib)

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libsz2 (>= 1.0.6)

  Adaptive Entropy Coding library - SZIP

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
armel	1.408,9 kB	9.010,0 kB	[overzicht]