Пакунок: fasttree (2.1.10-2)

[ Source: fasttree  ]

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Інші пакунки пов'язані з fasttree

• dep: libc6 (>= 2.14) [amd64]

  Бібліотека GNU C: спільні бібліотеки
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.7) [armhf, i386]

• dep: libgomp1 (>= 4.9)

  Підтримувальна бібліотека GCC OpenMP (GOMP)

Завантажити fasttree

Завантаження для всіх доступних архітектур

Архітектура	Розмір пакунка	Розмір після встановлення	Файли
amd64	171.8 kB	469.0 kB	[список файлів]
arm64	163.6 kB	457.0 kB	[список файлів]
armhf	159.9 kB	373.0 kB	[список файлів]
i386	172.6 kB	501.0 kB	[список файлів]