Пакет: fasttree (2.1.10-2)

[ Источник: fasttree  ]

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Другие пакеты, относящиеся к fasttree

• dep: libc6 (>= 2.14) [amd64]

  библиотека GNU C: динамически подключаемые библиотеки
  также виртуальный пакет, предоставляемый libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.7) [armhf, i386]

• dep: libgomp1 (>= 4.9)

  вспомогательная библиотека GCC OpenMP (GOMP)

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Архитектура	Размер пакета	В установленном виде	Файлы
amd64	171,8 Кб	469,0 Кб	[список файлов]
arm64	163,6 Кб	457,0 Кб	[список файлов]
armhf	159,9 Кб	373,0 Кб	[список файлов]
i386	172,6 Кб	501,0 Кб	[список файлов]